Scaffold Ga0102854_1097624

Overview

Basic Information

• Taxon OID: 3300009058
• Scaffold ID: Ga0102854_1097624
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 840
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010471	Metagenome	303	Y
F021206	Metagenome	220	Y
F087886	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102854_10976241	F010471	AGGA	MMQLTLAINTNAYPEYDKRQLNEMLGLLPLWVAEHVGNDDSTDIVQFMTDRYGFGKLYKFDGKINQDGDYISSHEDDADMPYIGKMITKDGYAYFY
Ga0102854_10976242	F087886	AGGA	MSNFRKIWKLDLMDWDNSENKFVDRYSTYHTSKKKAVERAKSYIELIKVDKLGSVDERTKNSTSVHSASGDTLGYIHSERLL*
Ga0102854_10976243	F021206	AGGA	MTVTLNQILAMENVLATRKIPSDIEAMAKAKRYSNSKQKVITLGEQPLHYVLRILAKEGL