Basic Information | |
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Taxon OID | 3300009058 Open in IMG/M |
Scaffold ID | Ga0102854_1038140 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1384 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009531 | Metagenome / Metatranscriptome | 316 | Y |
F015600 | Metagenome / Metatranscriptome | 253 | Y |
F022197 | Metagenome / Metatranscriptome | 215 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0102854_10381402 | F009531 | AGG | MTKQVAIYEMNYSVSPGGIDCWEATINGYGTSTTASDFKTAGEALNWVLDRYPAEMLELVVTSHQAYEKEYV* |
Ga0102854_10381403 | F022197 | AGGA | MTLETEIAENPTMYADYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIEENVFVPELGEWHTK* |
Ga0102854_10381405 | F015600 | GAGG | MKTTELEPRLQKLVDNGESGTDILHGELKNLMLEAENDYIEIEKEEREGGYSDAMLSMDRTRAEGRMDALVDVYALTYQLAFAINDRIKNNE* |
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