Scaffold Ga0102854_1038140

Overview

Basic Information

• Taxon OID: 3300009058
• Scaffold ID: Ga0102854_1038140
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1384
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009531	Metagenome / Metatranscriptome	316	Y
F015600	Metagenome / Metatranscriptome	253	Y
F022197	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102854_10381402	F009531	AGG	MTKQVAIYEMNYSVSPGGIDCWEATINGYGTSTTASDFKTAGEALNWVLDRYPAEMLELVVTSHQAYEKEYV*
Ga0102854_10381403	F022197	AGGA	MTLETEIAENPTMYADYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIEENVFVPELGEWHTK*
Ga0102854_10381405	F015600	GAGG	MKTTELEPRLQKLVDNGESGTDILHGELKNLMLEAENDYIEIEKEEREGGYSDAMLSMDRTRAEGRMDALVDVYALTYQLAFAINDRIKNNE*