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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009039 Open in IMG/M |
| Scaffold ID | Ga0105152_10319647 Open in IMG/M |
| Source Dataset Name | Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 648 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Russia: Lake Baikal | |||||||
| Coordinates | Lat. (o) | 53.7598 | Long. (o) | 107.9791 | Alt. (m) | Depth (m) | 0 to .05 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020137 | Metagenome / Metatranscriptome | 225 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0105152_103196471 | F020137 | N/A | MSVHTTNIEAAKLLREHWPTCSTWNDEQILNWIGIFNAKKLIGIVKNEEGKCVGVGAVRFLNSIEESEDLNNNFPDGHIAWIEIAIGTEPCAVQTLWLAMMRLCSKNVTKLGGFRKGISRLYDFDRYFKLLMNKRISYGRII* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |