Scaffold Ga0105152_10050155

Overview

Basic Information

• Taxon OID: 3300009039
• Scaffold ID: Ga0105152_10050155
• Source Dataset Name: Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1666
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → Planctomyces bekefii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Russia: Lake Baikal
• Coordinates
  • Lat. (^o): 53.7598
  • Long. (^o): 107.9791
  • Depth (m): 0 to .05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001834	Metagenome / Metatranscriptome	628	Y
F013411	Metagenome / Metatranscriptome	271	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105152_100501551	F013411	N/A	PLSLRGNVMGLDLYVSNKAVSTSIDESAFIVVPSSVAIMESPVLQLSTNIITTGEIETMLYGYMAVKTLVAGGVRRYNLT*
Ga0105152_100501553	F001834	N/A	MPSTILSDIRTPLATALAGVAGNVYSFVPETVIPPAVVVVPDSPYLELQTINKSTLHTKINFTISVAVAYNSNPASLDNIEQLIMSVLAVIPTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQT*