Scaffold Ga0099829_10033170

Overview

Basic Information

• Taxon OID: 3300009038
• Scaffold ID: Ga0099829_10033170
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3702
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035095	Metagenome	173	Y
F062216	Metagenome / Metatranscriptome	131	N
F078801	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099829_100331702	F035095	AGGAG	MASLNPSQSSGYGAAAAPARQAENVQTERRNAFADAPLAARPTGYGLPCAKCKTYYASDLKACPVCKSPQRVSPIEPLARIAPQEQLPDPQQLEEERERFLREFNAQVVASPLPADSPTPALHCNLEENHQSSAEPASVCQGCFDRLQERLDVLEAAMHMDVNEASQIVYDAVWADPSDPNKTYQNAAQALLTELKRRSGIPQVFGPLQPPPN*
Ga0099829_100331703	F078801	AGGAG	MKIKTTPLATLVFILVALGFSQTPPIPVAAQPGDIASGVVESEKEGKLYLNTTPCKPAQEGNSVIFHKPYTKTAAGEIVCFGHHFDKVSVRQQ*
Ga0099829_100331704	F062216	GAGG	MSAEDSKVPGQPVFEDIGALKHQVDSLKREVESLKTESRSWIRTWGVYLGILASFFAVPRAAKEAFDSFYQHPKFSVLTPVPLTLFYDAQHQKVMFTFPMLASNYGNRGGVIVGAKAHFEPPPMDATDPQFKFVDDTKHAVDIPFPVPIGVSKSVVGSVAFTGSGLIVPGPHRLDVTLIGDDRKPLPMMPMQFCFDINNELITVISQEPQRLLNTPCE*