Scaffold Ga0099829_10023847

Overview

Basic Information

• Taxon OID: 3300009038
• Scaffold ID: Ga0099829_10023847
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4252
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000217	Metagenome / Metatranscriptome	1557	Y
F000440	Metagenome / Metatranscriptome	1137	Y
F001138	Metagenome / Metatranscriptome	767	Y
F004017	Metagenome / Metatranscriptome	457	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099829_100238472	F000440	AGG	VRSDRTRDERTKCTPARRAAKYLKRVAALTGAKQVCGESYRLTAGRMHFLVDPEFVRVVSPRSESTCFSVPGETAMPSAEAVASALLQLKNNARLFEKWRELRGYPFKANGKMFRDPYQLTRDET*
Ga0099829_100238473	F001138	N/A	MLSTTLSLIAFFALIAWRFVFTGLRRKPLAREISALQQQHNKVIEQGPRIFDLAGVGVIPDNRFEHGSDGVRPITPKDRAKTYLRRIVALTDATQVGDAGDAYVLDVGKMRFHVGHRYVRRLRDMTYPGCAYEETCFYPVHKGMPKAEEIATALLQLTNNPALFDKWAVQNGLAFKADGQVFTRAQ*
Ga0099829_100238474	F000217	AGGAG	MNAKIVTFSSHGDTTLLEYDPATADMEEVNKVIAEYEAKTGAQPFDMATGERLEKISREQNEVLMVHPIAGG*
Ga0099829_100238475	F004017	GGA	MGLERETAMHGRTAALFAFALAGFAGEIAIHARGTSQTPVTDQPLSAEERARLLAKGKELFLALCSRCHGENGDKPLRTGVPLSERRLSTDEIASAVKGRLRNGTDEERRAVTLFISSLMKTKDPEDKAASKP*