Scaffold Ga0099829_10009400

Overview

Basic Information

• Taxon OID: 3300009038
• Scaffold ID: Ga0099829_10009400
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6269
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003037	Metagenome / Metatranscriptome	511	Y
F007915	Metagenome / Metatranscriptome	342	Y
F040037	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099829_100094006	F003037	GAG	LWVEFKCPLCGKDLDDDNTMANFLVCGDSSHGLLRFFTGDGCYFTTNEHVAEELMKKGKRVHIVDPKEFFGNQTINLE*
Ga0099829_100094007	F007915	N/A	MIGIVLYAFGLVLNEIGNGLTQLWLVPYADTISALGFVIALYTAALAGLGTRLTVLIGLIYGIGIFYVSEPDATYVASGLKISSYNTTHFVGLGLIGFTMILLIALAFYLTRAKSGRRTLPKQDPGSTS*
Ga0099829_100094008	F040037	N/A	GVSRRILRDIRVLVFVFFLSALIVPQVTQVNPQNLVIVSNAFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTSRLTVTVPAAWTSRWLSSLGGIGAFVSFAVAMGGNLDRAISLGFTLMISLLPSCILAPTLFYRRLEPGIIAKIRSSKAAMTMARFFPQISNPSLPPLSAPTLRSVRVTEETKQSSEPHA*