Scaffold Ga0099829_10001586

Overview

Basic Information

• Taxon OID: 3300009038
• Scaffold ID: Ga0099829_10001586
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12671
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002349	Metagenome / Metatranscriptome	568	Y
F012169	Metagenome	283	Y
F030185	Metagenome / Metatranscriptome	186	Y
F044058	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099829_100015863	F012169	AGGAG	MKSSVRWFLFEYQGRKLVILSKGFKTKELAEKVRLKYPKSVRRKIGIGVVRVTNR*
Ga0099829_100015864	F002349	GGAGG	MIVCFDQCDYCRSSIFSGQRWAREKIYDPALNGRDPSYHCYHAEPFAGQEASCWEKHEMEREIARMTACAA*
Ga0099829_100015865	F044058	GGA	MVSNNSHAERRTVAGIDFVAEELGLGIKCCEVALSSASAATWDRKIKNAQRAHDIAQRFVHRFRISGHEADRINHRIVHLKTLLEELK*
Ga0099829_100015866	F030185	GAG	MGAAVRLKVQSGEIVEGGVVHLWQDESLAMVRVASGDLVYNLPLTMLVDEKQR*