Scaffold Ga0105093_10072030

Overview

Basic Information

• Taxon OID: 3300009037
• Scaffold ID: Ga0105093_10072030
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1614
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0991
  • Long. (^o): -99.1044
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001807	Metagenome / Metatranscriptome	631	Y
F074793	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105093_100720302	F001120	GGAGG	VTKKSPISFDRTIHGVNITEHGIKSVSKQIKLGPFQLTVNASPNGVKGSVSIPGTGLSIPGIKLI*
Ga0105093_100720304	F001807	GAGG	MTVLAIEHTSFTDTHVTVTAVVDDMRLLYRATRFEPEEWAPALCTTTIELDPGESIPLDEDGFCSYLDQLDPLWQLLDLSDDE*
Ga0105093_100720305	F074793	N/A	MYFQLPSNLQQELLAYDPKLKALVKEQEPKKTTKKAQYPLGNIPHLIPENVVRAGYQQEAIDRINASGVSERYHRFTKVVDIATPQARTITIAVLYHFEQCWYAAWLPAKGEDYLYGYAYAFKNTAAAAKMLPRHIWNSKDQCTEHTIGRGSQTFTYSRTITKEDVIAGNDARNWRAMGIASYYQKSRDMNNAINIFEKTLMETFPIWDDCRSMFE