NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115863_1343754

Scaffold Ga0115863_1343754


Overview

Basic Information
Taxon OID3300009034 Open in IMG/M
Scaffold IDGa0115863_1343754 Open in IMG/M
Source Dataset NameIntertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, Korea
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMacrogen
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1745
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Sediment, Intertidal → Subsurface Anoxic Archaea In Intertidal Mud Flat Sediment

Source Dataset Sampling Location
Location NameGarolim Bay, Chungcheongnam-do, Korea
CoordinatesLat. (o)36.88Long. (o)126.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039458Metagenome163Y
F093178Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0115863_13437541F039458N/AVLFAKHSPLPLEVIIPILEASGRGEQELVAQLYDTYTGLAKGVKEILGLKEKNMKTLAKIGEIVLSFEGRKFQPIELTDSRFSFSLSDCPMLHVGEGVSLDVKSRFCDLICTGVTKALMDTALGPHRGTCTWEKALIRSARKCTVVFELVKA*
Ga0115863_13437542F093178GAGMSYWKNPLLLVSILLVAVGVVYISAWLNTAESISYADLKTALAITTETFGIILGIITGGLMFTQGKFSELSSELNEKLPEYLTNILSLKKMQAIEAHLLTLRKTFNSLAVGTTIVKEKDLYERIVEKASSLSANFAVLSHLKLKQQGLIDTRFLVSEMDSNLYEIYERRKQNIKREWQLLRIIKQTVDIWEAPATSFIEKPNRKSALQADLKSSISILKLKENVDRGSRNIRSEVTKTLDDLRSEIGEISKRLDKDRIPKLLSQMEQASTIRGKYFYLTLIFIAAPLLINLLILPQLSEATATFFKPIILITSLLSIMGVMFLFLYIHKILNV*

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