Scaffold Ga0115863_1269690

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115863_1269690

Scaffold Ga0115863_1269690

Overview

Basic Information
Taxon OID	3300009034 Open in IMG/M
Scaffold ID	Ga0115863_1269690 Open in IMG/M
Source Dataset Name	Intertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, Korea
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Macrogen
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2016
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Sediment, Intertidal → Subsurface Anoxic Archaea In Intertidal Mud Flat Sediment

Source Dataset Sampling Location
Location Name	Garolim Bay, Chungcheongnam-do, Korea
Coordinates	Lat. (^o)	36.88	Long. (^o)	126.38	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F088271	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115863_12696904	F088271	N/A	MEKGEIKQIADYLKELEEGLVEWDYRGITTQGHLTKLYGIIKRLMDATFKTKDQELKVLFASLEYKARKCKQCIEARTGVRN*

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