Scaffold Ga0114950_10739514

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114950_10739514

Scaffold Ga0114950_10739514

Overview

Basic Information
Taxon OID	3300009030 Open in IMG/M
Scaffold ID	Ga0114950_10739514 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N075 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	777
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Kermadec Trench
Coordinates	Lat. (^o)	-32.8507	Long. (^o)	-177.6629	Alt. (m)		Depth (m)	9177
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005071	Metagenome	413	Y
F105372	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114950_107395142	F105372	AGGA	MNKKEIIDWLNWNDVRNTYPKWLWVANGVVIVMALLVILFV*
Ga0114950_107395144	F005071	GGAG	MSQLNTKEKCTIRDLIKIEIKSLTRDGYGEYRYFENEYCAFLLKLGRKLKLDTQQKIKAKKVY

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