Scaffold Ga0102829_1115717

Overview

Basic Information

• Taxon OID: 3300009026
• Scaffold ID: Ga0102829_1115717
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 844
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F013084	Metagenome	274	Y
F071169	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102829_11157171	F013084	N/A	MGILSILGLMEETKNTVLHRGHNVKKWLVLGNDCYALECADCKKTVMIKENPLPNEI
Ga0102829_11157172	F007310	N/A	MRTVYWNNTERWNNHHHYELLIEDITGFDLKKILCEQSVKYMAKRLSDTKYQRRFKTLYTIYENEYNALVEKFNNQAENNGKIEVA*
Ga0102829_11157173	F006220	GAGG	MKKFKKFIEELAIASGTEMMRASQMRTTTFKDKSKYSRKQKHKKGSENE*
Ga0102829_11157174	F071169	AGG	MSSIEVQVNLDELDVVRRKLSFICNKDFTAEETIQFLIEREYNTAKKVSFTKKPHHDIAKSDIKEAIYN