Scaffold Ga0102829_1054877

Overview

Basic Information

• Taxon OID: 3300009026
• Scaffold ID: Ga0102829_1054877
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1200
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102829_10548771	F039000	AGGA	MTKKTDDTDKDIAQIMDNAQTLLNFCATTFVKPADAWFSCLVSAAILTAELEVPLEKFLDGFEHAYEDALKAKKNMGASYDH*
Ga0102829_10548772	F031377	GGGGG	MITNAHEFISVDHTDGRLTPFNTGKVQIGLLYQPPPPEMTSSEELIQAVLMGWSSIHRPVPLWPLTLGSLIVGFLIIFVVG*
Ga0102829_10548773	F028744	N/A	MSNQYEFEYECDELGLALRCLFEYEPEEIGSIEPMSGMKLEPDYPEVWTLVSVFLPNSNVDLSGVLHPDVIFRIEQDAPVYFEEMRRVV*