NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102811_1303049

Scaffold Ga0102811_1303049


Overview

Basic Information
Taxon OID3300009024 Open in IMG/M
Scaffold IDGa0102811_1303049 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)599
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053312Metagenome / Metatranscriptome141N
F095315Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0102811_13030491F095315GGAGMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLPAHFVG
Ga0102811_13030492F053312N/AVGLIRDENPLWEGSYQSLPDIAKDGLITLWLATHPTWMDDVFPHTVSDKRMLALECVYSEDATSRMAAAMFRDAAERNAKDVDNDAYLSEALDDFEAILDTPDFLEEIRHQIYMYLEPSMEELVMDSFQDLNHLDRLVMGSH*

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