Scaffold Ga0103706_10002703

Overview

Basic Information

• Taxon OID: 3300009022
• Scaffold ID: Ga0103706_10002703
• Source Dataset Name: Eukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_S1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Woods Hole Oceanographic Institution
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2268
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Eukaryotic Communities From Seawater Of The North Pacific Subtropical Gyre

Source Dataset Sampling Location

• Location Name: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000446	Metatranscriptome	1128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103706_100027031	F000446	N/A	MRLRTKLSGQKVTSSGIYLENCKYVNYGFFGNLEVVSHQGFSTFLANLDDCVSALNWKGSEKDTGMEPWGEDLFMQRCMDLHGVDKVEAFDITTDSMCKAFRPKGEKTNAKWRPNCALTSTAAMHPFMKPFDYFECLKATQR*