Scaffold Ga0066710

Basic Information
Taxon OID	3300009012 Open in IMG/M
Scaffold ID	Ga0066710_100114223 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009012 Open in IMG/M

Scaffold ID

Ga0066710_100114223 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3656
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3656

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007552	Metagenome / Metatranscriptome	349	N
F040877	Metagenome / Metatranscriptome	161	Y
F056470	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066710_1001142231	F056470	N/A	LRNFLVNDSTARPNTAYFVNVDGTAQAGFAPTVSYAGRLTHGAGGPDTDDGFYVGGALHYYLGATYGRAIGPAGFTTGAPPVLGSTPSPLLNGDVFTSNKPFGRGVGGDVGVVWISGPFEVGAGVNDIGAELTWSHSKIQHFVYDNAGDSIATIVVSADTSLKTKLPITYIANAALHMGTGTTVGGDVVNSGRGTVIHVGVEQRTGPLAIRGGVSRDQRKKMQFGFGGGLRLGPIGLDVGFFTHSNSLSTQRAITMATAISIY
Ga0066710_1001142232	F040877	AGG	MKALTAAFLVLLAACGKGRVIFNIDVLSFLSASDSLKGYNVIGGIPQTDSTVSRQFILPPGFGKSSVDSVSATAAASLENATGSGSVQFDVFFSKAQGSLFTGTPYLTASSGAVVGADTVPLLPPTTVSLADSVFNTDSLWVGIRARLSTNVGPNMTGHLRLNQIQLRIVLQDKVF
Ga0066710_1001142235	F007552	AGGA	MRRIGMAVLGLSLMASPLFGQRSALREVRDRGAFGADFVVAEPLGEFSRNGDVAAGLSIFGVTSGGALALRVEGAWMAYDVSYQGYGVSTTSQIGTLGAGPQLTLGKGALRFYGFATMGGSLFWSNASYNSCGCSASDWLDGHTTWMRSAGGGVLLGITAGHTPIAIDIGARGVRHDRVTYVPAGGLTQNSDGSFTARQVTTPVDMRVYQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066710_100114223

Overview

Ecosystem & Geography

Associated Families

Sequences