Scaffold Ga0102813_1071075

Overview

Basic Information

• Taxon OID: 3300009003
• Scaffold ID: Ga0102813_1071075
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1140
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022202	Metagenome / Metatranscriptome	215	N
F024324	Metagenome / Metatranscriptome	206	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102813_10710751	F022202	GAG	MKNKDQKILQNWIDTLQGINVRGMDSKSRLEARLLKKAWLEESKKIENKIPDHDPAFYQNIKEALKKKKDKMASKNLWTSFFENKFKAFLVVILGTGVVYA
Ga0102813_10710753	F024324	N/A	LKIVFLGYFIQGQIFDSLMAYFNTIRIEVTNPHKIYFDIPSDEYSLNGYVAAKLKAKELCEDIVKTTSL*