NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102813_1071075

Scaffold Ga0102813_1071075


Overview

Basic Information
Taxon OID3300009003 Open in IMG/M
Scaffold IDGa0102813_1071075 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1140
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022202Metagenome / Metatranscriptome215N
F024324Metagenome / Metatranscriptome206N

Sequences

Protein IDFamilyRBSSequence
Ga0102813_10710751F022202GAGMKNKDQKILQNWIDTLQGINVRGMDSKSRLEARLLKKAWLEESKKIENKIPDHDPAFYQNIKEALKKKKDKMASKNLWTSFFENKFKAFLVVILGTGVVYA
Ga0102813_10710753F024324N/ALKIVFLGYFIQGQIFDSLMAYFNTIRIEVTNPHKIYFDIPSDEYSLNGYVAAKLKAKELCEDIVKTTSL*

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