Scaffold Ga0102813_1000233

Overview

Basic Information

• Taxon OID: 3300009003
• Scaffold ID: Ga0102813_1000233
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26195
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029447	Metagenome / Metatranscriptome	188	Y
F029448	Metagenome / Metatranscriptome	188	Y
F056620	Metagenome / Metatranscriptome	137	Y
F080618	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102813_100023316	F029447	N/A	MNVKSLTLKNKLTLDKTGEGYWDLTAPSFIYDADLGVRALHYVTQDQIGRIDKISEVYFGSGEFIDAICVVNNIFNPFSVNEGDVLIIPNLKRKDIVYKKPNPAVTPSAPQQAYVDTGRQSEKDQGRMQRLIEKAKSSEAGVKQPMPPNMLQPGQESKTYSGGKIQLGTNLKSKSTLKKSQTN*
Ga0102813_100023318	F056620	N/A	MNFKYEINNRARKIPIKKEDYKNVKSLEDRFDESDRERLYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFNVRFKKGWVDKFQKGDIDIDKYLNSLG*
Ga0102813_10002334	F029448	N/A	MAISVTEILGTDSLSGSRLVLNDNFNILTSEINAMEVYFNPTAGTLSNLQNVQTEALRVGLSTVLLDINASTFDVLTNVNMTGNLNLNGGGLFRNDVDPQTLNDGFATGLPGVITVGTSTAIPPYTVERVGNSTGTVVTIQLNDGAIGQELFFVYSEAQTGLITIQGASTPLVLPGGTKIDLDAQGKTAHLLCVDDGTGNGVWFLVGGTGYTIS*
Ga0102813_10002335	F080618	N/A	MVNNWKHLNFFDKGGKYLNFDYDPSEDRWSGTMYLPEVSIGLFEVGQIFILEEFVNRNTNLKEFGFPHGVEVATGTTGSTGGVCEWTAEWETTDPNEIFLFQFDMDFNTGTQTSLEMEADGPPLEIITELEISLNSDPTETIDPQGYTVTDVINPEALQLNVAIRSEKENTFQRTLLIKDSCTDKIIAEILIYGETTGEDERLRVMTQNMGYNILESDSEIFRNTNIKELLPDFDEVNLKRKEIMMEGYNIYPFIGSYKGLINAIKFFGYDTLKVREFWKNVDANSPMFGKYIMSNDIDVFDPTVQLNDKKITLPNKRFRKTSLFSLVYRINNIVPNRFDEESLPITEENYDFTIEEILIKLFGLKKKLENEFLPLNARIKDITGEADFFGLLEVVNTLSRNDKREIVAGIDTNFKLSTEDCIYMEDLRSFSSFCLASEGIVDEAIVNFCNAYIAPLSPVNAIGRNLLLGPTTPGQVYPPSPIGPDFNGPMGIPYDGSNVTIAGLADAFLAYFTRYAPDLNKVGAWPDGESSYYLPDKPGIPVGAMTILENDSFNNITWDNVDSTWDQLNDANKFFTFDIDPQGVAAGDVFTINDPDTNTGATYTAVLGDTDTDVRNALYNQLIALSNLFNQPWIWWDITKETGVTGDVLRLFGQNVDRLKVTCQSSFGSALLFNQLPGETLFTWDGIERGNFEEIEWTIYKEETDISPSYYKVFRGPLSQYNKLPIILPYVGTYSVEMKLFDLYNNISSNVKTDFICVENREVEYSGWYQAREANYSWNSEAKEVWNNYGSLWNLPITPSVTWDEESPSLYESLDRVNAILNNFGLGASPDFQLLNYQDDGKASFSGPYRWDNLTTGGWNDTYHLWWDMTSTSGDTPAFFQFKEVQPETYLKITALNGDTAEHYFDSSITTLAEAAADLNVSTNTIINKYVYNVVYDASNNQMFVQAVCRYFGLHGDFKNVDIVYADGDNVCPSTGTGSPWPTGDDNCPSLIYRKGQSVASNPTWNTAKFINNGKTLPKMTWLMFVYDKCKIPGKGKPRWIIKNTTNSSMADIYFESKYLTYLFKNSGKYEITLELTDTNGNKYKKNRNILVIK*