Scaffold Ga0102963_1007443

Overview

Basic Information

• Taxon OID: 3300009001
• Scaffold ID: Ga0102963_1007443
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4731
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4973
  • Long. (^o): -122.1295
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014069	Metagenome / Metatranscriptome	266	N
F023860	Metagenome / Metatranscriptome	208	N
F026152	Metagenome	199	Y
F026154	Metagenome / Metatranscriptome	199	Y
F027854	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102963_100744313	F023860	AGAAG	MKENNMDKMKEMFELRNAIRIFLEEKLEAKVQGAGMSITEPSSADISFKIDNTNYVLTIDEV*
Ga0102963_100744315	F027854	AGG	MKLHELINELRAKLKKSLQDVLQLRKDLDLEREEHQLTQLRYENIKNAINKEVDRLNQRRPDVEIPADEKGVK*
Ga0102963_10074434	F026152	GAGG	MTKIKTPKFWTAKAWAEHMLHISGFTDIKEVKSVQSNTRGKVPRKSNKSKQSSKATV*
Ga0102963_10074437	F026154	AGGA	MNGIITVIRFVTYTIGGLAIRKGWNWLNTDVDPIPFTKEFDEEYAQTKAKYIRLTKKKEEYEAYRKSRRTIS*
Ga0102963_10074438	F014069	AGGAGG	METVKAPINERVATKVMPLTKWFVEQYFQTYELMSSDPRFKALPAYNQTSCIATVIIATNNALDKSRDARKSAETLQDISKATEERKAVNE*