Basic Information | |
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Taxon OID | 3300009000 Open in IMG/M |
Scaffold ID | Ga0102960_1006685 Open in IMG/M |
Source Dataset Name | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4404 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration. |
Source Dataset Sampling Location | ||||||||
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Location Name | South San Francisco, USA | |||||||
Coordinates | Lat. (o) | 37.4972 | Long. (o) | -122.1293 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F005315 | Metagenome | 405 | Y |
F007006 | Metagenome / Metatranscriptome | 360 | Y |
F020467 | Metagenome / Metatranscriptome | 224 | Y |
F024584 | Metagenome | 205 | N |
Protein ID | Family | RBS | Sequence |
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Ga0102960_10066853 | F005315 | N/A | MLIVSCGDSFTQGEGLSDIRQCYPYLLQKKLNADLKNLSQSGASEYLITSQVEEAVKLKPDLILIGHTNEYRWQVWDFKQNMWQGFIVATHVLKNEKYYRNWVLSEQLLNNARKKTKEHQAAWHAAGMLYFSEDEVVKRMWSGAVAKQIINTKGIKTIHHCCFPHLQPELAELTNDYLEFHLDLEKHKDFAPDGSHAGAKSHIKLAELLLNML* |
Ga0102960_10066854 | F007006 | GAGG | MEAALKSELKAEISRIVDLMIQIEAMRDKISALKKDIKEEYGIPVATITKVSTIVRKENLNEEEEKWEEIKEFVEACS* |
Ga0102960_10066856 | F024584 | GAGG | MYFKLVSKNAYRDLVRNARRICVSQISDSEKSEAFKELYETLKRRLGETTRTLNAETAFAKRCIHWNQRDIPCIKPVKTLRNPWLRFKREFVNAIDARDAPKRIEIALAWFYASPHRDDWVAS* |
Ga0102960_10066859 | F020467 | AGGA | MHKRPSLPEARAFLSQHAPEIIQEYTALIDTHGEFFAARYIIDIVDHYNHLNNIGVVNG* |
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