Scaffold Ga0102816_1054860

Overview

Basic Information

• Taxon OID: 3300008999
• Scaffold ID: Ga0102816_1054860
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1188
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002643	Metagenome / Metatranscriptome	540	Y
F008751	Metagenome / Metatranscriptome	328	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102816_10548602	F008751	N/A	MNATLFIIGQAIVIVIGLIGIYVKISLKLKELEIRVNMVEKQDDTLSKKLDHILDQINKLAIALQNKQDR*
Ga0102816_10548603	F002643	N/A	MKYQQLNTLVASINAVIGSQETKVQKKLFRLYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKENIKKLTAQVKELGEKEFEFKPIEVINTQGLENFTFLEDWTTGITFIKEEEEEL*