Scaffold Ga0102816_1020146

Overview

Basic Information

• Taxon OID: 3300008999
• Scaffold ID: Ga0102816_1020146
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1925
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005742	Metagenome / Metatranscriptome	391	Y
F007116	Metagenome / Metatranscriptome	357	Y
F061836	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102816_10201462	F005742	GAG	MKLTGLKNIMKEVNEPNEFELFASDLQHPYYWIFKVNNVRIKTISPQIEKLRRPTARFDVFVNGLFISENDYVYENKGNDFYVKFIKTKFPDFDRFGDVYEIDETDEIKINGDLEKFAI*
Ga0102816_10201463	F007116	N/A	MRRPIPNINVNNTQKFRDRAGFKQFVLQVNTDTFIYSYFPDTIELNEDKTLFTLILLNKKFIFYILEIDNVKDYVDVYLFGVKQPQDRYTIVANGNNIIVTFSIDITRLPAEVKETDFEIKGKIAEII*
Ga0102816_10201464	F061836	AGCAG	MARLIPRKQIEEQQNISGSLDITQNLNVRKDAIISGSMFVSQSFFFGSDTGSKNEITGSVFLTDS