Scaffold Ga0102831_1148900

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102831_1148900

Scaffold Ga0102831_1148900

Overview

Basic Information
Taxon OID	3300008996 Open in IMG/M
Scaffold ID	Ga0102831_1148900 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	777
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2	Long. (^o)	-123.94	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013505	Metagenome / Metatranscriptome	270	Y
F091611	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102831_11489002	F013505	N/A	MKHFPSYEARLEADRQAQHSGYGIQHYLCADGSRKWEAYGWERITELQVHTTSYGIFDHKWQAEQFFNNIINA*
Ga0102831_11489003	F091611	N/A	MPYSLVVDDEWGVPYALKTFDSLQDVHDEIRTMDEALDNVGPGVAYAIRCIIDQLKEIVHEAEEEPETLPDRPTF*

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