Scaffold Ga0102831

Basic Information
Taxon OID	3300008996 Open in IMG/M
Scaffold ID	Ga0102831_1001429 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300008996 Open in IMG/M

Scaffold ID

Ga0102831_1001429 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10069
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10069

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (36.36%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2	Long. (^o)	-123.94	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2

Long. (^o)

-123.94

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002356	Metagenome / Metatranscriptome	567	N
F007111	Metagenome / Metatranscriptome	357	N
F032960	Metagenome / Metatranscriptome	178	N
F104722	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102831_10014291	F104722	N/A	EKQLLQNLHRIMATLSREGGLFGLFPKKYDGAAHAERAELMKKHAKVGDVWGVVSFFLLSSESYLKVLSDYSKHLMKTAGELT*
Ga0102831_10014293	F007111	GGGGG	METTILANGQPVGKFGSGSMKGIDQTALEGIGSIAGPKSGGKSPTYDVLIKWIERVIELAKKNLEAANANAGGTLSASIAPEDIELSAKQIVVAIMANPYWKYVDQGVHGRSSSYISARDSKFRYDKNIPPPQAIADWIANKGIPVVPTYSRKLKRMRTKQEQGLVLGRTMAFAIRERGVRGTKFMSNALSPEMIDVLVNTIAETLGKSISVATKL*
Ga0102831_10014294	F032960	N/A	MATTVLSGSPQVATPVYNKMLFKVSGSLTAQPNYRYVCDVKNPAGTTLARLKCDKLPSTNFGFFDVAKVVETLIAPTKPSLTQTGFVDHAGYYSGYRLDFMEEYGNTPVVYTGTVTTVSGRVAFAGNLEQLELATWSSTLYFPSGAIVNDTNRMLTTPTTRTVYADGYGWLSIGQFNYAVEKAYIQYWSATGATFARQFDVLASSVSGSNVVRFGVGPMNLKALTSGQCLDGNPGDYLFQGNAGDFYDVYFSRGANITIRQRYVIGQCQRFNSIPVHFQNKYGGIDSYTFTLKNRKRANITRQTFGYNSDVYATTTYDKVWAGEFDYVYALNSDWLTDAESAWLIEMIRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0102831_10014298	F002356	N/A	MNLKNAIESLRTELRKFSTQKQSFADYKLTDGTVVRVDGDLVAGTAVYVVAEEGTLPAPDGEHVVEGVGTIKTEGGKIVEVIAAEVATPVIEPLPVAAEITPEVAVEVTEEIKDAYPAMTPEVVEAIVAKHLAGIMEDLKAAYAEMGKMKEKMSAFASQVETMADIVEKVSELPAEAPKASGSAIVEQRKAQASQNFNALAQALQSLKSKN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102831_1001429

Overview

Ecosystem & Geography

Associated Families

Sequences