Basic Information | |
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Taxon OID | 3300008996 Open in IMG/M |
Scaffold ID | Ga0102831_1001429 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10069 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (36.36%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.2 | Long. (o) | -123.94 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002356 | Metagenome / Metatranscriptome | 567 | N |
F007111 | Metagenome / Metatranscriptome | 357 | N |
F032960 | Metagenome / Metatranscriptome | 178 | N |
F104722 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0102831_10014291 | F104722 | N/A | EKQLLQNLHRIMATLSREGGLFGLFPKKYDGAAHAERAELMKKHAKVGDVWGVVSFFLLSSESYLKVLSDYSKHLMKTAGELT* |
Ga0102831_10014293 | F007111 | GGGGG | METTILANGQPVGKFGSGSMKGIDQTALEGIGSIAGPKSGGKSPTYDVLIKWIERVIELAKKNLEAANANAGGTLSASIAPEDIELSAKQIVVAIMANPYWKYVDQGVHGRSSSYISARDSKFRYDKNIPPPQAIADWIANKGIPVVPTYSRKLKRMRTKQEQGLVLGRTMAFAIRERGVRGTKFMSNALSPEMIDVLVNTIAETLGKSISVATKL* |
Ga0102831_10014294 | F032960 | N/A | MATTVLSGSPQVATPVYNKMLFKVSGSLTAQPNYRYVCDVKNPAGTTLARLKCDKLPSTNFGFFDVAKVVETLIAPTKPSLTQTGFVDHAGYYSGYRLDFMEEYGNTPVVYTGTVTTVSGRVAFAGNLEQLELATWSSTLYFPSGAIVNDTNRMLTTPTTRTVYADGYGWLSIGQFNYAVEKAYIQYWSATGATFARQFDVLASSVSGSNVVRFGVGPMNLKALTSGQCLDGNPGDYLFQGNAGDFYDVYFSRGANITIRQRYVIGQCQRFNSIPVHFQNKYGGIDSYTFTLKNRKRANITRQTFGYNSDVYATTTYDKVWAGEFDYVYALNSDWLTDAESAWLIEMIRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL* |
Ga0102831_10014298 | F002356 | N/A | MNLKNAIESLRTELRKFSTQKQSFADYKLTDGTVVRVDGDLVAGTAVYVVAEEGTLPAPDGEHVVEGVGTIKTEGGKIVEVIAAEVATPVIEPLPVAAEITPEVAVEVTEEIKDAYPAMTPEVVEAIVAKHLAGIMEDLKAAYAEMGKMKEKMSAFASQVETMADIVEKVSELPAEAPKASGSAIVEQRKAQASQNFNALAQALQSLKSKN* |
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