Scaffold Ga0104258_1000784

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0104258_1000784

Scaffold Ga0104258_1000784

Overview

Basic Information
Taxon OID	3300008993 Open in IMG/M
Scaffold ID	Ga0104258_1000784 Open in IMG/M
Source Dataset Name	Marine microbial communities from eastern North Pacific Ocean - P1 free-living
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	University of Georgia
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5306
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Microbial Communities From Seawater In Eastern North Pacific Ocean

Source Dataset Sampling Location
Location Name	eastern North Pacific Ocean
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090050	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104258_10007846	F090050	GAGG	MIKSSKESIDKVVINIERSIDYFINQHTADINGASRIRNDASVVRSLFEYRTALLELLEENTPKKKRGNPNFGKDNPYLNKEVNE*

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