Scaffold Ga0102889_1126138

Overview

Basic Information

• Taxon OID: 3300008964
• Scaffold ID: Ga0102889_1126138
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1551A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 754
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.187
  • Long. (^o): -123.8837

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085714	Metagenome / Metatranscriptome	111	Y
F096666	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102889_11261381	F085714	GAG	MDILSEIIETADNIMYELESNGFYDEYIFCDPFKLRRELEIQMQRNWEQLNDIHLLDEQFTQIVERLTTEGIHKTFGDMVMDGTIVMDSVNAD
Ga0102889_11261383	F096666	N/A	WLRIGDDGITITNHKFTYSNVSPQEFQNIVIKVVEKSIEKNRDEFETAVFQNEIELLENIIANIKNK*