Scaffold Ga0104242_1015325

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1015325
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1340
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017469	Metagenome / Metatranscriptome	240	Y
F024719	Metagenome / Metatranscriptome	204	Y
F072283	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_10153252	F072283	GAGG	MNTMQDLINAIKPILPNALVIDTDSGILIETGLELGLGGLLQTIEREGE*
Ga0104242_10153254	F017469	GGAG	MKTICQFCGWEITKPEWYNSYDQAYACDDCLMDKDIEHYKERENA*
Ga0104242_10153256	F024719	GGCGG	MTNVVELPNRNKITVVFYEVSDPQDIAVWGGESPREALDWYRRSPAGSKIWVSQYETDEEEARLVLDLIEITPIVLATITDSIDRWSK*