Scaffold Ga0104242_1005195

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1005195
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2392
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030670	Metagenome / Metatranscriptome	184	Y
F034827	Metagenome / Metatranscriptome	173	Y
F048123	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_10051955	F048123	GGAG	MKSRFNFDKAKLISYDGEIIEFAETKIIDKYADQVEEIMRLFNLKKGEYILTDESTIGHFGKETINKILLEKFKKKYGFSLTNKSNISKIAERMYNFRPF*
Ga0104242_10051956	F034827	N/A	MKYTITSRDKEAMVEFNSLKEGDVFSFFDPESVQKGNHSIYMKIKNGSNNIVDLDDGKVFGFSDKKRNTLNDPDEQQGDRVYKLNAKINVIV*
Ga0104242_10051958	F030670	N/A	MKVIRYIKELEDEFGKPIDKWAVYEETQKFNYPHAKFIDAKIVKIFPSPYHARNWMENDGK*