Scaffold Ga0104242_1004139

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1004139
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2713
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024770	Metagenome / Metatranscriptome	204	Y
F053995	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_10041392	F024770	AGGAG	MAVSHQRVSVGTTATQLTSDYDGKDGQTINVQNPAGGVDVFLGGVGVTTTSYGFLLGAGISFSVELQDDEKLYAVVTTGTQTVNILRQGT*
Ga0104242_10041394	F053995	AGGA	MPQVNRISRGEVSVGAIQGSTGDMVYGLDFGTASVDPASIPTVSRGSVTFTLTGAKTTDIIIVNPPADLNDDLIFCGAAVSAADTVSIYLYNPTASAINDTARTFSYVWIDMTA*