Scaffold Ga0104242_1000921

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1000921
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6076
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053062	Metagenome / Metatranscriptome	141	Y
F069775	Metagenome / Metatranscriptome	123	N
F104750	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_100092114	F104750	AGAAG	MNTKLQKILADAKIGKAEFDAGSYYVCSEGTLETIIKSVVDACAEEARRYTFRSNGISEDYNGTTNVEIEIRKLYESGN*
Ga0104242_10009217	F053062	GGA	VWKKLSKVNILKWVATFVTLGGALATALMIDPLNIWLLNSGALLFLIWGFLIKEKAMIAVNFGLLAIYVFGLIYRI*
Ga0104242_10009219	F069775	AGGA	MYSKYSVDELQGYYSDFHKDFYGYRPRGFGTEEDWNNRDWLISNIDKIHDAMDKMKETFSGREELRTNGWVIEETDPELAKQAKWLADERKREYEAWVASIERNYTEENSSVYSAD*