Basic Information | |
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Taxon OID | 3300008962 Open in IMG/M |
Scaffold ID | Ga0104242_1000556 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5 |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7870 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (84.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Lanier in Georgia, USA | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003965 | Metagenome / Metatranscriptome | 459 | Y |
F005531 | Metagenome / Metatranscriptome | 397 | Y |
F017484 | Metagenome / Metatranscriptome | 240 | Y |
F066779 | Metagenome / Metatranscriptome | 126 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0104242_100055611 | F003965 | N/A | MITLENKKCVEHNPMKSAISEYADTQFTFCQDCEQNIERWYNDTDPERLPMWTDWKVSQ* |
Ga0104242_10005565 | F005531 | GAG | MTITYTLWQGSNLLAVNQKASKPEDILAVIEELNKLGKGFTYNIREVDTK* |
Ga0104242_10005568 | F066779 | AGGA | MFSLKYKIELNTNPLYPLGKEFSTCLGVLMNTEQDANEYLDLLALRGTILEVELVELKDYKPSKYVPIATTRSWE* |
Ga0104242_10005569 | F017484 | GGAG | MSSLEIFRLNEQGAGWVSLEDATTAELLDLELAITFNAPMQMLCFKCHTPIPKGNVCVNHKNVKGAIYFE* |
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