NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104242_1000556

Scaffold Ga0104242_1000556


Overview

Basic Information
Taxon OID3300008962 Open in IMG/M
Scaffold IDGa0104242_1000556 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7870
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (84.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameLake Lanier in Georgia, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003965Metagenome / Metatranscriptome459Y
F005531Metagenome / Metatranscriptome397Y
F017484Metagenome / Metatranscriptome240Y
F066779Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0104242_100055611F003965N/AMITLENKKCVEHNPMKSAISEYADTQFTFCQDCEQNIERWYNDTDPERLPMWTDWKVSQ*
Ga0104242_10005565F005531GAGMTITYTLWQGSNLLAVNQKASKPEDILAVIEELNKLGKGFTYNIREVDTK*
Ga0104242_10005568F066779AGGAMFSLKYKIELNTNPLYPLGKEFSTCLGVLMNTEQDANEYLDLLALRGTILEVELVELKDYKPSKYVPIATTRSWE*
Ga0104242_10005569F017484GGAGMSSLEIFRLNEQGAGWVSLEDATTAELLDLELAITFNAPMQMLCFKCHTPIPKGNVCVNHKNVKGAIYFE*

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