Scaffold Ga0104242_1000556

Overview

Basic Information

• Taxon OID: 3300008962
• Scaffold ID: Ga0104242_1000556
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7870
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F005531	Metagenome / Metatranscriptome	397	Y
F017484	Metagenome / Metatranscriptome	240	Y
F066779	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104242_100055611	F003965	N/A	MITLENKKCVEHNPMKSAISEYADTQFTFCQDCEQNIERWYNDTDPERLPMWTDWKVSQ*
Ga0104242_10005565	F005531	GAG	MTITYTLWQGSNLLAVNQKASKPEDILAVIEELNKLGKGFTYNIREVDTK*
Ga0104242_10005568	F066779	AGGA	MFSLKYKIELNTNPLYPLGKEFSTCLGVLMNTEQDANEYLDLLALRGTILEVELVELKDYKPSKYVPIATTRSWE*
Ga0104242_10005569	F017484	GGAG	MSSLEIFRLNEQGAGWVSLEDATTAELLDLELAITFNAPMQMLCFKCHTPIPKGNVCVNHKNVKGAIYFE*