Scaffold Ga0115650_1182851

Overview

Basic Information

• Taxon OID: 3300008954
• Scaffold ID: Ga0115650_1182851
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1318
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 247

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077180	Metagenome	117	Y
F081216	Metagenome	114	Y
F105509	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115650_11828513	F105509	GGAGG	VKVGDMVLAEDGQTAILMTEPRRGDDPEDCGPYYVAEVYLTEFGCKDVWITDDLEIISEGR*
Ga0115650_11828514	F077180	GAG	MKRGDLLRYAGDGSLWIVEWADDKYIKIATMTHPILIKYSDLEVVSEGR*
Ga0115650_11828515	F081216	GGAG	MDFQVGDLITLKHHRGNPEAPPPLAVVIGTEAIVFDRIMIQFCDSSRPEMAAPEHWVVVSRHETR*