Scaffold Ga0115650_1048877

Overview

Basic Information

• Taxon OID: 3300008954
• Scaffold ID: Ga0115650_1048877
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3722
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD12-C183 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 247

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079939	Metagenome	115	N
F093730	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115650_10488774	F079939	AGG	MIDQKEQQCIDIILENHPGDSWIYTNDQFSELDGLFVRNGVVRAVAEIKARESPLGTYEKEMLGWNKMEAGQWASKAFRCPFYLFSYHSMNDVVAAYRITDEAGKFVRKFDVSDYEQNRTSEDRENKVTRKTAWVENKDPGLLARRGLRCIY*
Ga0115650_10488776	F093730	GGAG	VTVFVRCENDGRWRLWVRSAAGEAPAGVRLNRGGLFPYETLYDHQDHAEATFQAGRLQEYIEDRERVLMANRKRKNRWN*