Scaffold Ga0104241_1001659

Overview

Basic Information

• Taxon OID: 3300008953
• Scaffold ID: Ga0104241_1001659
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1708
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104241_10016591	F007359	AGGA	MKLIKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSESFAYFWITLEKLERVMFKYVMNSLSDKLGKKFRGAKGGLKAVVMNRVMNTINNIPSEHF
Ga0104241_10016595	F035200	GGAG	MTSKFIVLRDGVRVSEDMHSSEASAEVEANYWREIIKRWPDGTKVIVKKIGG*
Ga0104241_10016596	F010746	N/A	MTYKCAVSGEAIPPERVEALQVLGVPESQWTKIEYSQTRKLKAVYAGDDGSNDIVICDNVDGGSMFDNAVVAETENDI*