Scaffold Ga0104241_1000115

Overview

Basic Information

• Taxon OID: 3300008953
• Scaffold ID: Ga0104241_1000115
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6131
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED131 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: Lake Lanier in Georgia, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054798	Metagenome / Metatranscriptome	139	N
F056376	Metagenome / Metatranscriptome	137	Y
F060726	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104241_100011514	F060726	N/A	MYGDNKSVLYGKKMYRNVLLTDKEIALLKSVISQTLHDKVSIDRNNLTIIHNRLREIKPLVSNNQFFNYGK*
Ga0104241_10001154	F054798	GGAG	MIYLYLNETQRLAEIVSELVKLNMGVVAELHGNRWHIEVTQ*
Ga0104241_10001159	F056376	GGAG	MTLIKCFSNVIGHKEAQDLVVDLNQMKSSQSDPFYIKYDKHQDYSKDDNYLVVGNVTQNDWDELNLDMDFMIADIV*