NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103738_1003504

Scaffold Ga0103738_1003504


Overview

Basic Information
Taxon OID3300008935 Open in IMG/M
Scaffold IDGa0103738_1003504 Open in IMG/M
Source Dataset NameEukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 3A
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1596
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ice Edge, Mcmurdo Sound, Antarctica → Eukaryotic And Microbial Communities From Ice Edge, Mcmurdo Sound, Antarctica

Source Dataset Sampling Location
Location NameIce edge, McMurdo Sound, Antarctica
CoordinatesLat. (o)-77.36Long. (o)164.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002029Metatranscriptome602Y
F010165Metatranscriptome307N

Sequences

Protein IDFamilyRBSSequence
Ga0103738_10035042F010165N/AVNECLAECHPITDKWGACYVNDKEGIERAQRCLCAPLPGAAGDAFINTLLAGACVTNQIGYLNRAYNGLCMFPDERVQPVYQCESIPTFNSRNSAVACNPGVGFNVACFSVRRRTPWQCASEAEMNPSCRTTQLVPQDGSPFYDGACVFEGADQWSTAMIYEEP*
Ga0103738_10035043F002029N/AVLFVFNLVRFLDKMRSVSILSIITLAVARRANIKEHQPGWGDDPLADFALDQNDWPDCLIIPTFPGKCPIADHPGACYRTDGRMWSCWADWEEKSDAECQQMTLNDEIVGFEGACKYQDYGVIMTVAEVPDCFDVNECLAECHPITDKWGACYVNDKEGIERAQRCLCAPLPGAAGDAFINTLLAGACVTNQIGYLNRAYNGLCMFPDERVQPVYQCESIPTFNSRNSAVACNPGVGFNVACFSVRRRTPWQCASEAEMNPSCRTTQLVPQDGSPFYDGACVFEGADQWSTAMIYEEP*
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