NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103733_1001940

Scaffold Ga0103733_1001940


Overview

Basic Information
Taxon OID3300008930 Open in IMG/M
Scaffold IDGa0103733_1001940 Open in IMG/M
Source Dataset NameEukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 1B
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2227
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ice Edge, Mcmurdo Sound, Antarctica → Eukaryotic And Microbial Communities From Ice Edge, Mcmurdo Sound, Antarctica

Source Dataset Sampling Location
Location NameIce edge, McMurdo Sound, Antarctica
CoordinatesLat. (o)-77.36Long. (o)164.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018547Metatranscriptome234Y
F038696Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0103733_10019401F038696AGGLHSRFADILLTLTTGNLAVFTLNNEEQVLSASHKGCRDNEHEKCNGKRECEMELYRLWTQWVSEEEELFEIHEHIWGHFCPPGTNGTLHSFRVQSVPWMQQYMAQKEVVEAAEFSYDSTVPTCRIAHRELDDESSRCNAIQGRLEGTACSHGQKINEVLTTYYNDFAQAESAYHCAVQEVMELERDRKKEWITLQVVHCLLERIREQNGVPCDDSTGGVTEQVGICEQEHTREVCSPAVASADSSMMEGGEPRLCLTYPVVPPVPEFCLTRNDVIGACLPVIQPMPCCGEWHNQEYANLPVVPLPPFSHANPGCNAYPECDGCQAMTPPTLTIIDACPGNTVDGCDSSNSEVGEHPLTLAFAGTADVRCCSIDGDTCQSQDFVGGQQFTTPTGEVHEGCYAQVSYQEAMAVCHAAGQRICQDHEMQTCCSTGCWHDHHAIWVDMDNSVSGSLHSFNEHRDNGADIDDDRFVNTHNNTDSRASRIAQLPADNSFNNEPIAQLD*
Ga0103733_10019402F018547N/AMQTADEGLVNMRSFVLAATLGTAQSMAVGATSKKPAIQALMESATTMLKNGATSAVVDFAEETLNEIESVVIPAIINESLNDQAFVSSLHGRFADILLTLTTGNLAVFTLNNEEQMLSGEHKGCRAHEHEKCEGKRQCEMDLYRLWTQWVSEEEELFEIHEHIWGHFCPEGTNGTLHSFRVQSVPWMQQYMAQKTVVETAEASYDSKVPDCRITHRELDDESSRCNAIQ
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