Scaffold Ga0103711_10023581

Overview

Basic Information

• Taxon OID: 3300008928
• Scaffold ID: Ga0103711_10023581
• Source Dataset Name: Eukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_E3
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Woods Hole Oceanographic Institution
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 839
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Prorocentrales → Prorocentraceae → Prorocentrum → Prorocentrum minimum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Eukaryotic Communities From Seawater Of The North Pacific Subtropical Gyre

Source Dataset Sampling Location

• Location Name: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066421	Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103711_100235811	F066421	GAG	LPSFEDVTTTAGDAPTSSLFQGLSSGPSYYCGGTWNQNNNWGSNYGDPIGNTDTETCKRLCGMSGSNKCTGWTVTNNNECYLKTGVADMQDDPGVQGSGYCYPSCGDQQNKQNNDGRNYEGPIQVQNAEFCKVRCQASGGQCKGWTVTNNGECYLKDSVGPMRPDGGVQASGNC*