Scaffold Ga0103951

Basic Information
Taxon OID	3300008832 Open in IMG/M
Scaffold ID	Ga0103951_10001300 Open in IMG/M
Source Dataset Name	Eukaryotic communities of water collected during the Tara Oceans expedition - TARA_A200000150
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300008832 Open in IMG/M

Scaffold ID

Ga0103951_10001300 Open in IMG/M

Source Dataset Name

Eukaryotic communities of water collected during the Tara Oceans expedition - TARA_A200000150

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3472
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3472

Total Scaffold Genes

2 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000039	Metagenome / Metatranscriptome	4032	Y
F004929	Metagenome / Metatranscriptome	418	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0103951_100013001	F000039	N/A	MAERAKDQRKAEFELLDVLIKKHEELIPTVMKTQVMVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKSLTQLETKRNVVKDLIEKGRVLLMNPDKPRFLDSHVKRIEEGWDDTKEKAQARLTLLNDTKAAWEGYAEGNITIVEEFDKCVDETKKVKKRFNLEAAFEDLAKRQEIFGNTKDTIHSIFNKLKSDYETMCLTLPEDKKKLLEKELVPVEEKLALVKTFDEKVAKIVEFCNSLKNFDESLKSIDGWMIEATKELEDIKNTSDKLTPEDRVSRTMDLQEDIEAKYEIIEKNVASELELLPQGDKVPADAQEYKDELNRIKQYVVDLREKCKKECNSYSEDVKYWAEYRTGIKEFTPWLTEAEKASGEGLSKPTNLSEAEALFAKSSSFDNNCVAHLKLLNAANDAAQRMTTHKEADVEVAALKERYNKVKSVSDEWRAKVETLVKEWKLLDNTVTELNAWVAKDKTAEGENQFSLEKMESTLGELKNIFKQKEKLVEDL*
Ga0103951_100013002	F004929	N/A	LIEKGTGLLQNPDKPRFLDEHVARIVEGWDDTKLKAQERLKLLNDTKAAWEGYADGQEVIEEAFAKADEEIKKIKKRFNLDNAKEDLAKRQAIFKKTKDDLLAVYNKLKSDYDVMCITLPDDKKAIVEKELAALTEKMVIIDTFEEKVKKIEDFCGNLELFDNTNKSLDDWMTRATDEMDKIKNHSHQMVPEDRVAVCMELQEDIAAKVVIIEESIAKEQQLLPQGENIPKDAMDHKEELQRIHKYVLNLQEKVKAECASFSEDVKYWAEYRTGIKEFTPWLESAEKETAGGLGKPTTLPEALALFEKVSVFEKRCGAHLKIMESAEAASKKMTTHQEADDQVAALMDRYKKVKSVCDSWMAKVNTLVQEWKLLDSTVNELNDWVAKDKTSEGENQFSLEKMESTLSELKNIFKEKEKLVDDL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0103951_10001300

Overview

Ecosystem & Geography

Associated Families

Sequences