Scaffold Ga0115663_1026534

Overview

Basic Information

• Taxon OID: 3300008740
• Scaffold ID: Ga0115663_1026534
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1972
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025142	Metagenome	203	Y
F064085	Metagenome	129	Y
F097509	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115663_10265342	F025142	AGG	MSMNMRGRSVSFVVKAGSRATLQVTVKDSSGVAKNLSNTVTYNSGKWKVWKPDGTLLIDGAITFADRANGIVTYALGATDATNAKAGVWEGEVELKDSSSVISEQTQSFNFTIEESY*
Ga0115663_10265343	F064085	AGGA	MTDITIVASGTCAECGHSQKDHEGNTVCDVEGCECTNIGSY*
Ga0115663_10265344	F097509	N/A	MLKIDDIKQEVYFQFRRSQMEALKTERLGVIHVSDLIKPCMRNVIYKKVLPEQRASTEDMKSLYFGQIVHSNSMIAKPEHHEKFLAYDYVRDEPLTYEEAKALPLEDPRHLDIIYGSIDDLIQMGEKWIIVDKKTTGSIGYFSKATSRPSESHVDQINRYRVLLKKCYDIDADFGCVIYISNKIEKETYDRPVPIPFKLKPIEETLKDMIEKARVVKASMTDGTLPERTKCFLCDGMCPYASLCFEDNRAKWDVELK*