Scaffold Ga0115663_1014369

Overview

Basic Information

• Taxon OID: 3300008740
• Scaffold ID: Ga0115663_1014369
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2999
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019229	Metagenome / Metatranscriptome	231	Y
F056672	Metagenome / Metatranscriptome	137	N
F069327	Metagenome / Metatranscriptome	124	Y
F105867	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115663_10143692	F056672	AGGAG	MKAQEYNLTGNEKFSVWFTTMMMMTSAQLDPDSKARIMNMAKIMCVGECLDMQKLENDDPAEMEKSKEKQKELDAMKDAIWKEMDKIQEVLTACYGEPRKGNKHHRCRHND*
Ga0115663_10143694	F069327	GAGG	MGRWDEREKAFDKAFDGDTPEEIMDDFEVAKWQVSSYRYKKEHFLIGLDLISEGKRIDERLDFWESRLEILCRKNYQLLKSKGKDVDEIMDFFSEKTKEKLK*
Ga0115663_10143696	F019229	N/A	VCTGTYARIFAVFWSFFFFQENIMKENKKQSIQSDESDGEKMSEKPTLVKKGIRTYHGIVEDSFENKKENYDEVCHTEDRRIVNAAISLRSRLSSKEREEAQEWHRNFSALVGEWMC*
Ga0115663_10143698	F105867	AGGAGG	MSFSERERFIYHAATLMTMQHLQALSKSDLQKNLKAMQNNRCVGLTDKQVEEIFLDVEYEALAMMRNAQEKLAKSCAKRQGYKKREFAEDVQEDFK*