Scaffold Ga0115663_1003629

Overview

Basic Information

• Taxon OID: 3300008740
• Scaffold ID: Ga0115663_1003629
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7785
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F023710	Metagenome / Metatranscriptome	209	Y
F076183	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115663_100362910	F023710	AGAAGG	MLYKNKLKGLLIRNKELKIMLKNVERKIQIFLEGVGGIKRLEFVHGTLYLKLEDDKDCDFIHKELRTFYKEFINPEGGVNMYFVGDEFAFDFVPVDAETPLWDEPEGSKIDTLLELENEMSQGK*
Ga0115663_100362912	F076183	AGAAG	MKKIDLDTLETELKEHDWTYEMSDDHSYWTSGTSHRKEIKVQVEKLYDMGLGKKVEVLFYKHYPVKGCHEVNGYGIKKTWEEHLDRKAMEYNDI*
Ga0115663_10036299	F000302	AGGAG	MVKIMTQDTKDRIADLERQKIALEDQLELVGNNLVKMHEIESEIYEIDDTIRKLTA*