Scaffold Ga0115609_1004931

Overview

Basic Information

• Taxon OID: 3300008715
• Scaffold ID: Ga0115609_1004931
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763577454 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5886
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080166	Metagenome	115	N
F099453	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115609_10049311	F080166	N/A	VNILANFENYNKVVEQIFELNYYLTFKLEVTFNTIHKKINNEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTVIEESINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAITPLLGTNRQNMLR*
Ga0115609_10049314	F099453	N/A	MLRRKDMNRFDVIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEVELKCVKQSCQWILDNMQYIRSLGLVVIPEVYQARLANLTNVIYTPKYPIAITMAKLEYMLGRKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSINLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA*