Scaffold Ga0103623_1004066

Overview

Basic Information

• Taxon OID: 3300008651
• Scaffold ID: Ga0103623_1004066
• Source Dataset Name: Microbial communities of saline water collected from the North Sea in Germany - HE327_13
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Goettingen Genomics Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 874
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → unclassified Cellvibrionales → Cellvibrionales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → North Sea → Microbial Communities Of Saline Water Collected From The North Sea In Germany

Source Dataset Sampling Location

• Location Name: North Sea, Germany
• Coordinates
  • Lat. (^o): 54.4365
  • Long. (^o): 8.2328

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054345	Metagenome / Metatranscriptome	140	Y
F059341	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103623_10040661	F054345	N/A	VFLYSGFLVYFFDFSIKTVGGGPTCQSLFFACAKKSNQKKAHNLTKIDPDITYSLWDGFIQYTLATPTKTFFTRLSWSSISELASSQYHSDSADFSKHNEATTNKFSRLLFILEQVKTVPNGRLLLLSSACRSKKIVEEPSREKIAMKSSSSKE*
Ga0103623_10040662	F059341	N/A	MLDVSAAQKKYPLYRLAIISLELLDRKHCEMHPSWLSFAVKLTAFLVTF