Scaffold Ga0111033_1001217

Overview

Basic Information

• Taxon OID: 3300008516
• Scaffold ID: Ga0111033_1001217
• Source Dataset Name: Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf. Combined Assembly of MM3PM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aarhus University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1552
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location

• Location Name: Aarhus Bay station M5
• Coordinates
  • Lat. (^o): 56.10555
  • Long. (^o): 10.463333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075043	Metagenome / Metatranscriptome	119	Y
F092306	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111033_10012171	F092306	N/A	NMTMPATFYDGSDWEQSSEPQVFVDVQEGDCWPVDVRSESTTKDQLDDGLHPFVAVGEYAAPTRPLNLVGVVTSVNLSALGTATDRVVLNIAHGSIYRQYVNNILTYSGGAPNTYETTPQVGQPVYIDDSADLSEGVTLSMSPLNWNDVENPLAGVLWYCQDEIADGQVGGARATSTFDTVLADEAVEQIYCVMLVAGFRELA*
Ga0111033_10012172	F075043	AGGAG	MRKIIHAMSELRKGQLADAGASPQRLSEVEDMFAVLNRELDGIKPSGSNANLREVMISADFTYAIQEFVQRLALPGYTEKQFNFEPLVKADVLPNYLPVNRYQMRAGLDDLEYVGEKGQARPGSVVDATKRQYQVYRWEKQYDFSHEALVNDDLGYFSDMAMLMGRSARRTLEKFVSRMYTNAVSIAALTALGALYSQNGRLTTARISECRMAFNQRTDARGNPINARLVYLVHHAGLVDTVAQIQQSELVAELATNAANVVRGTFTPIEDPHMAGTAPNLPWWGFTANASGVVPFVLARRAGMPGPMI