Scaffold Ga0115078_100038

Overview

Basic Information

• Taxon OID: 3300008496
• Scaffold ID: Ga0115078_100038
• Source Dataset Name: Human stool microbial communities from NIH, USA - visit 1, subject 160178356 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 154073
• Total Scaffold Genes: 203
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (37.93%)
• Novel Protein Genes: 18
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (38.89%)
• Associated Families: 18

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F089590	Metagenome	109	N
F089592	Metagenome	109	N
F098313	Metagenome	104	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115078_100038108	F098313	GAG	MEFDFVIYPLKLIITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFANLVRDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINSKNTD*
Ga0115078_100038133	F076653	AGG	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYKCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFIRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYDKGFKERLAKRFNKSLGGDGELFGANLACMVCDRKDIDWEALRFWLDKYDDPTDKGMVNSPIQFMYLYLYYSFNK*
Ga0115078_10003814	F083452	N/A	MSGRIKIKPKNKDKKPDIDVFKIIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR*
Ga0115078_100038162	F078005	N/A	MKKSEFVKALEKIIDMVKIEDDGFEYGGKVIFYKEDDDNYEITVKNIEMDLMVEASAMASMDDRTFACLMSEVYKQKFTKAITISEDEDDEDN*
Ga0115078_10003817	F102167	N/A	MDINQIKTYLPSGWDVVDLIDHGIIDLDIMNGKMMGEYMAVLMIKSYDKITESHNLTTFSFHDKDMGGLRRLVSNAIMAVGLRNNPLKGDGNTATK*
Ga0115078_100038191	F085718	AGGAG	MVIEFDFEIYKNGDYDKVYLRNGKEPRVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSIKEREPELWVVVISYMDNKDKRQKMVLPNFFSKNIRGNIYLQGSSKSSVSYYVDKLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDEATV*
Ga0115078_100038193	F078006	N/A	MGDNILRKAAEELKKAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLETALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI*
Ga0115078_100038199	F080673	N/A	LATIEINMDEIELLRLQDEALSYLRDNITKDEAYYVLTTDKDMIEILIADKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRVDYDKVDFMFVYFMARIL*
Ga0115078_10003833	F058555	N/A	MGTKISLLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVVAYLTIVNVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYKHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKKRSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKNISDLYDEVKKNNGIANAKDRKNVTIGHLRLSYRGTIMHIIIAECFIKDVFLGVKGVEMDKAG*
Ga0115078_10003844	F089592	N/A	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGMDKDEVDRLVNQRVNNIMKPFEDISQKDLSQTNLEFWDDAKDKIFMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIMSMSNIDDKSKTKKVKDIKKKDDVEEGDKIKEE*
Ga0115078_1000385	F057001	N/A	MARANLMTGKDLNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKDNDIKVDKAVVPALVALAKDKEEVIQLCKEILPRVNDTFCAYKEVEREYYDKQDQANNSKLPSDKVNDIAVLGDTHKRFGYCEPIAYNDTGSVPYYEVFNGSDKRIVKVAIPIKRYTYNLIAKCITYYLTHPKNGK*
Ga0115078_10003853	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYTNDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGKDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQSCRMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNMGQRTTVISEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLNLSSCYLDRYIKEFNDLPKLTSLNITSGPPDMWNYFDINTLPFFEVDKINPNITDFAFLDDWMNGERRTGWNDDNMSGRGLEHLTGFIAANSNSLRMDKLPDYIYEMRAITGFNVDASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAVYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE*
Ga0115078_10003856	F089590	AGG	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIKKIADDEVKDKS*
Ga0115078_10003857	F075481	AGAAG	MRLRISLRAIFCLGLSLSLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTVDSLGIDKTITGVKDIDKKTDIEHKDVDDKKESRWPIAITSISVLLILLVLIYLLKKMKVL*
Ga0115078_10003865	F106193	GAG	MMNHSSSTAVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAEHIKP*
Ga0115078_10003882	F064725	N/A	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI*
Ga0115078_10003890	F077313	N/A	MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDNVFPASFKGSLQHIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTKAKTANVVGTVMSGIGGVLGLARNVFSGMASEQGTSTNIRLAQEREARQRRQSQMRYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEGQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEEGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALDKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYREQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNAFGYQRQGQDGSYGGINTDERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYSTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKASYHDRMRDNKFGQYSSSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDIVNKILGEDMLKMQALRFMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRILYPAQEVTKGKKG*
Ga0115078_10003893	F050794	AGG	MLYTSNYFVKVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDVLLPTDDDNANIIIEHNGIIKKLMREAEKLELDTDAIKVMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLEAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVMMIEDRYSYALYMTEEYG*