Basic Information | |
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Taxon OID | 3300008450 Open in IMG/M |
Scaffold ID | Ga0114880_1076308 Open in IMG/M |
Source Dataset Name | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1348 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Western Lake Erie | |||||||
Coordinates | Lat. (o) | 41.7032 | Long. (o) | -83.2575 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000403 | Metagenome / Metatranscriptome | 1177 | Y |
F009883 | Metagenome / Metatranscriptome | 311 | Y |
F012452 | Metagenome | 280 | Y |
F038208 | Metagenome | 166 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114880_10763081 | F009883 | N/A | NTMNELSIVIFMIIAGAFWAVMSYAVGFKEGQRQGYTRGRSVARHAVTADRKVNN* |
Ga0114880_10763082 | F012452 | AGG | MAGFLENYEGNKERTDRWIATFPNGRLEAHIVEFNADKGFVLVQAKAWRNQEETEPAGIDYAFGYREAYNPNMKRWFCEDTTTSALMRVMALVMGGTEKATKETMEQVKVNDATKPVEHDYWTTKFGDVPSYKTAAEAEQAGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHRIWKQSHDGAPKSWGGYFCTERTKATQCTPLWYVLRSTGKWEPQV* |
Ga0114880_10763083 | F000403 | GGAG | MSDYMEILNPQNMTGRLYFQGEVLDEYKIEQCDKCSKLVKLDSFGYQKGYDNHEKVIWFCGDCR* |
Ga0114880_10763084 | F038208 | N/A | MITRMEEIQCMLAAIDHCKDRNADHSSRIVRNLSWFEYVAQNAESMVSEWTVAKALGYDYTPGMTWDKEKADVGEHIEVKWSANPHSNLWIQESDRHDRDIAVMVTGNSPKMH |
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