Scaffold Ga0114880_1036921

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1036921
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2143
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008607	Metagenome	330	Y
F019308	Metagenome	230	N
F068570	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10369213	F008607	AGG	MDAIYNKVAEFMTDSVVFTAKTSVDKYNKPTFSGDTTVTGRLIYDTTKSKDVQGIEVVDIGRFITKGPATTITVGHKMVVGADTFTINGVDNIADENGAHHTVIRFGR*
Ga0114880_10369214	F019308	GGA	MAKSSFRLDLFGDKELVNALQAGKENTPQAVAQAIWEEANVIFAKSQVLVPVDTGVLRGSGGVSAPQMGNTGYFVDIFYGGPAASYALYVHEIIGNYHNPPTQAKYLEQPVMEAMTTIQENIKGRIIDIIEKGHRN*
Ga0114880_10369216	F068570	GAG	MAEMQQPMSSNDAGNATGSSSKAQRARGVSDAPVVNPKINQDEFASALDSLVGLWKIQDGCSVGRITKELPEPSRTKFQEALRNEKVNSARLVEVLANFGITVGSDVMRRHRRRLLGKDGCKCPNES*