Scaffold Ga0114880_1025470

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1025470
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2700
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048311	Metagenome / Metatranscriptome	148	Y
F050373	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10254701	F048311	AGGGGG	MDKETQLDINIVIAAMREQIGLLALDKAMLTARIEDLEKQL
Ga0114880_10254704	F050373	N/A	TVQLTFVDGLAKLGKTIAPALAKADYQESAATRAGRLLDMASWPAGSRSLTGTVTMLKSAFGLSVLDHLEQCANVIGGRFYISRTGVATLVPLANKFSRPTQLLFSDQGDAYSVGYDGIYTNPGTDYVYNQAIIFRGPKKNQITITYNPSVSTYGLKTKKLDAPILSETSAVNLGVYAARKDADAVVLAEQIDFSALNLGVLQTDFLSTELNDQVTVKRETYDNRVITINGVIEGMAHSITPEDWRVSYFTSVLDPYSITI*